Contents:

Welcome to PGAP-X. This user guider will guide you how to use the software.

Brief Introduction For This User Guider

This user guider contains 8 parts, as you can see in the contents above.

The 1st part " 1. Introduction to PGAP-X " is a brief introduction to the tool, about its background, what it can do and what it can't do

The 2nd part "2. Deploy PGAP-X" guide you how to deploy this tool in your personal computer, you may want to find the specific part for your operation system.

The 3rd to 7th parts are about how to use this software to get analysis results and visualization results, each part is for one specific function module of the tool:

3ed part "3. Get Start" is for the "Get Start" module, which teachs you how to start the software and choose your data;
4th part "4. Get Genome Alignment Data and Visualization Result" is for the "Genome Alignment" module, which teachs you how to align your genomes and get the result data and visualization result;
5th part "5. Get Orthologs Clusters and Visualization Result" is for the "Orthologs Analysis" module;
6th part "6. Get Genome Variation Result and Visualization Result" is for the "Variation Analysis" module;
7th part "7. Get Pan Genome Profile and Visualization Result" is for the "Pan_genome Analysis" module.

The 8th part "8. Summary" is a brief summary.

Find your interest part, and enjoy your journey!


1. Introduction to PGAP-X >>